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bacteroides proteins bvu 4064  (ATCC)


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    Structured Review

    ATCC bacteroides proteins bvu 4064
    Structures of the N-terminally truncated Bacteroides proteins BVU_4064 and BF1687 (PDB codes <t>3kog</t> and 3g3l, respectively). The N-terminal domain (in slate blue color) and the C-terminal domain (in orange color) of the 3kog structure show significant similarities with the corresponding domains of 3g3l structure (N and C terminal domains shown in pale cyan and wheat colors respectively). In contrast, the region connecting the domains (in green) is clearly different in the two structures: a short linker in 3kog, an extended 4-helix insertion and one extra strand that is added to the C-terminal domain in 3g3l. A histidine-rich region present at the C-terminus in both of our proteins is found ordered only in the 3kog structure (see box with text in the Figure).
    Bacteroides Proteins Bvu 4064, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/bacteroides+proteins+bvu+4064/hTERT+Neonatal+Dermal+Melanocytes/pmc04387736-23-7-14
    Average 93 stars, based on 6 article reviews
    bacteroides proteins bvu 4064 - by Bioz Stars, 2026-09
    93/100 stars

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    1) Product Images from "Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions"

    Article Title: Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions

    Journal: BMC Bioinformatics

    doi: 10.1186/s12859-014-0434-7

    Structures of the N-terminally truncated Bacteroides proteins BVU_4064 and BF1687 (PDB codes 3kog and 3g3l, respectively). The N-terminal domain (in slate blue color) and the C-terminal domain (in orange color) of the 3kog structure show significant similarities with the corresponding domains of 3g3l structure (N and C terminal domains shown in pale cyan and wheat colors respectively). In contrast, the region connecting the domains (in green) is clearly different in the two structures: a short linker in 3kog, an extended 4-helix insertion and one extra strand that is added to the C-terminal domain in 3g3l. A histidine-rich region present at the C-terminus in both of our proteins is found ordered only in the 3kog structure (see box with text in the Figure).
    Figure Legend Snippet: Structures of the N-terminally truncated Bacteroides proteins BVU_4064 and BF1687 (PDB codes 3kog and 3g3l, respectively). The N-terminal domain (in slate blue color) and the C-terminal domain (in orange color) of the 3kog structure show significant similarities with the corresponding domains of 3g3l structure (N and C terminal domains shown in pale cyan and wheat colors respectively). In contrast, the region connecting the domains (in green) is clearly different in the two structures: a short linker in 3kog, an extended 4-helix insertion and one extra strand that is added to the C-terminal domain in 3g3l. A histidine-rich region present at the C-terminus in both of our proteins is found ordered only in the 3kog structure (see box with text in the Figure).

    Techniques Used:

    Superposition of 3kog and 3g3l structures. (A) Corresponding domains (colored in slate blue and pale cyan for N-terminal domains; orange and wheat for C-terminal domains; linker region in green) in the two structures superimpose fairly well with an overall RMSD of 3.7 Å for the 166 equivalent positions in the rigid-body alignment . (B) Stereo view of N and C terminal domains shown separately with linker regions removed to highlight the structural similarity.
    Figure Legend Snippet: Superposition of 3kog and 3g3l structures. (A) Corresponding domains (colored in slate blue and pale cyan for N-terminal domains; orange and wheat for C-terminal domains; linker region in green) in the two structures superimpose fairly well with an overall RMSD of 3.7 Å for the 166 equivalent positions in the rigid-body alignment . (B) Stereo view of N and C terminal domains shown separately with linker regions removed to highlight the structural similarity.

    Techniques Used:

    Structural similarities of the N-terminal domains. (A-F) Pre-albumin-like fold of the N-terminal domains in 3kog and 3g3l structures that is also present as a cell adhesion modules in several proteins belonging to the Transthyretin superfamily. (G) Alignment between the lipoprotein signal sequences present at the N-terminus of BVU_4064 and BF1687. The arrow points to the conserved CYS residue in the consensus sequence for the protein family PF12985.
    Figure Legend Snippet: Structural similarities of the N-terminal domains. (A-F) Pre-albumin-like fold of the N-terminal domains in 3kog and 3g3l structures that is also present as a cell adhesion modules in several proteins belonging to the Transthyretin superfamily. (G) Alignment between the lipoprotein signal sequences present at the N-terminus of BVU_4064 and BF1687. The arrow points to the conserved CYS residue in the consensus sequence for the protein family PF12985.

    Techniques Used: Residue, Sequencing

    Structural similarities of the C-terminal domain of 3kog and 3g3l with bacterial pore-forming toxins. The region shown in red is implicated in membrane insertion in the pore-forming toxins [epsilon toxin (PDB code: 1uyj) and aerolysin (PDB code: 1z52)] and in the hemolytic lectin (PDB code 1w3g). In both 3kog and 3g3l this region corresponds to a helical insertion.
    Figure Legend Snippet: Structural similarities of the C-terminal domain of 3kog and 3g3l with bacterial pore-forming toxins. The region shown in red is implicated in membrane insertion in the pore-forming toxins [epsilon toxin (PDB code: 1uyj) and aerolysin (PDB code: 1z52)] and in the hemolytic lectin (PDB code 1w3g). In both 3kog and 3g3l this region corresponds to a helical insertion.

    Techniques Used: Membrane



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    bacteroides proteins bvu 4064  (ATCC)
    93
    ATCC bacteroides proteins bvu 4064
    Structures of the N-terminally truncated Bacteroides proteins BVU_4064 and BF1687 (PDB codes <t>3kog</t> and 3g3l, respectively). The N-terminal domain (in slate blue color) and the C-terminal domain (in orange color) of the 3kog structure show significant similarities with the corresponding domains of 3g3l structure (N and C terminal domains shown in pale cyan and wheat colors respectively). In contrast, the region connecting the domains (in green) is clearly different in the two structures: a short linker in 3kog, an extended 4-helix insertion and one extra strand that is added to the C-terminal domain in 3g3l. A histidine-rich region present at the C-terminus in both of our proteins is found ordered only in the 3kog structure (see box with text in the Figure).
    Bacteroides Proteins Bvu 4064, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/bacteroides+proteins+bvu+4064/hTERT+Neonatal+Dermal+Melanocytes/pmc04387736-23-7-14
    Average 93 stars, based on 1 article reviews
    bacteroides proteins bvu 4064 - by Bioz Stars, 2026-09
    93/100 stars
    		  Buy from Supplier

    Image Search Results


    Structures of the N-terminally truncated Bacteroides proteins BVU_4064 and BF1687 (PDB codes 3kog and 3g3l, respectively). The N-terminal domain (in slate blue color) and the C-terminal domain (in orange color) of the 3kog structure show significant similarities with the corresponding domains of 3g3l structure (N and C terminal domains shown in pale cyan and wheat colors respectively). In contrast, the region connecting the domains (in green) is clearly different in the two structures: a short linker in 3kog, an extended 4-helix insertion and one extra strand that is added to the C-terminal domain in 3g3l. A histidine-rich region present at the C-terminus in both of our proteins is found ordered only in the 3kog structure (see box with text in the Figure).

    Journal: BMC Bioinformatics

    Article Title: Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions

    doi: 10.1186/s12859-014-0434-7

    Figure Lengend Snippet: Structures of the N-terminally truncated Bacteroides proteins BVU_4064 and BF1687 (PDB codes 3kog and 3g3l, respectively). The N-terminal domain (in slate blue color) and the C-terminal domain (in orange color) of the 3kog structure show significant similarities with the corresponding domains of 3g3l structure (N and C terminal domains shown in pale cyan and wheat colors respectively). In contrast, the region connecting the domains (in green) is clearly different in the two structures: a short linker in 3kog, an extended 4-helix insertion and one extra strand that is added to the C-terminal domain in 3g3l. A histidine-rich region present at the C-terminus in both of our proteins is found ordered only in the 3kog structure (see box with text in the Figure).

    Article Snippet: The crystal structures of the N-terminally truncated Bacteroides proteins BVU_4064 ( Bacteroides vulgatus strain ATCC 8482, JCSG target ID: 393242, GenBank accession: YP_001301288.1, PDB code: 3kog) and BF1687 ( Bacteroides fragilis strain NCTC 9343, JCSG target ID: 393243, Gene Bank accession: YP_211325.1, PDB code: 3g3l) have been determined to 1.85 Å and 2.2 Å resolution, using MAD and SAD phasing methods respectively as described in the section.

    Techniques:

    Superposition of 3kog and 3g3l structures. (A) Corresponding domains (colored in slate blue and pale cyan for N-terminal domains; orange and wheat for C-terminal domains; linker region in green) in the two structures superimpose fairly well with an overall RMSD of 3.7 Å for the 166 equivalent positions in the rigid-body alignment . (B) Stereo view of N and C terminal domains shown separately with linker regions removed to highlight the structural similarity.

    Journal: BMC Bioinformatics

    Article Title: Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions

    doi: 10.1186/s12859-014-0434-7

    Figure Lengend Snippet: Superposition of 3kog and 3g3l structures. (A) Corresponding domains (colored in slate blue and pale cyan for N-terminal domains; orange and wheat for C-terminal domains; linker region in green) in the two structures superimpose fairly well with an overall RMSD of 3.7 Å for the 166 equivalent positions in the rigid-body alignment . (B) Stereo view of N and C terminal domains shown separately with linker regions removed to highlight the structural similarity.

    Article Snippet: The crystal structures of the N-terminally truncated Bacteroides proteins BVU_4064 ( Bacteroides vulgatus strain ATCC 8482, JCSG target ID: 393242, GenBank accession: YP_001301288.1, PDB code: 3kog) and BF1687 ( Bacteroides fragilis strain NCTC 9343, JCSG target ID: 393243, Gene Bank accession: YP_211325.1, PDB code: 3g3l) have been determined to 1.85 Å and 2.2 Å resolution, using MAD and SAD phasing methods respectively as described in the section.

    Techniques:

    Structural similarities of the N-terminal domains. (A-F) Pre-albumin-like fold of the N-terminal domains in 3kog and 3g3l structures that is also present as a cell adhesion modules in several proteins belonging to the Transthyretin superfamily. (G) Alignment between the lipoprotein signal sequences present at the N-terminus of BVU_4064 and BF1687. The arrow points to the conserved CYS residue in the consensus sequence for the protein family PF12985.

    Journal: BMC Bioinformatics

    Article Title: Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions

    doi: 10.1186/s12859-014-0434-7

    Figure Lengend Snippet: Structural similarities of the N-terminal domains. (A-F) Pre-albumin-like fold of the N-terminal domains in 3kog and 3g3l structures that is also present as a cell adhesion modules in several proteins belonging to the Transthyretin superfamily. (G) Alignment between the lipoprotein signal sequences present at the N-terminus of BVU_4064 and BF1687. The arrow points to the conserved CYS residue in the consensus sequence for the protein family PF12985.

    Article Snippet: The crystal structures of the N-terminally truncated Bacteroides proteins BVU_4064 ( Bacteroides vulgatus strain ATCC 8482, JCSG target ID: 393242, GenBank accession: YP_001301288.1, PDB code: 3kog) and BF1687 ( Bacteroides fragilis strain NCTC 9343, JCSG target ID: 393243, Gene Bank accession: YP_211325.1, PDB code: 3g3l) have been determined to 1.85 Å and 2.2 Å resolution, using MAD and SAD phasing methods respectively as described in the section.

    Techniques: Residue, Sequencing

    Structural similarities of the C-terminal domain of 3kog and 3g3l with bacterial pore-forming toxins. The region shown in red is implicated in membrane insertion in the pore-forming toxins [epsilon toxin (PDB code: 1uyj) and aerolysin (PDB code: 1z52)] and in the hemolytic lectin (PDB code 1w3g). In both 3kog and 3g3l this region corresponds to a helical insertion.

    Journal: BMC Bioinformatics

    Article Title: Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions

    doi: 10.1186/s12859-014-0434-7

    Figure Lengend Snippet: Structural similarities of the C-terminal domain of 3kog and 3g3l with bacterial pore-forming toxins. The region shown in red is implicated in membrane insertion in the pore-forming toxins [epsilon toxin (PDB code: 1uyj) and aerolysin (PDB code: 1z52)] and in the hemolytic lectin (PDB code 1w3g). In both 3kog and 3g3l this region corresponds to a helical insertion.

    Article Snippet: The crystal structures of the N-terminally truncated Bacteroides proteins BVU_4064 ( Bacteroides vulgatus strain ATCC 8482, JCSG target ID: 393242, GenBank accession: YP_001301288.1, PDB code: 3kog) and BF1687 ( Bacteroides fragilis strain NCTC 9343, JCSG target ID: 393243, Gene Bank accession: YP_211325.1, PDB code: 3g3l) have been determined to 1.85 Å and 2.2 Å resolution, using MAD and SAD phasing methods respectively as described in the section.

    Techniques: Membrane